***This file contains the ABIDE algorithm results from the sub-organ analysis of kidney tissues resected 24 hrs after the injection of LGNRs. Images of the relevant tissue sections are presented in Figure 3 and Figure 2—figure supplements 9-11. Sub-organ region of interest maps are provided in Figure 3e and Figure 4—figure supplement 1a. With respect to the ROI types: “Type 1” corresponds to Glomeruli, “Type 2” corresponds to Distal Convoluted Tubules (DCT), and “Type 3” corresponds to Proximal Convoluted Tubules (PCT), as depicted in Figure 3e-f.“Type 4” was neither assigned nor segmented. Thresholds were determined by the algorithm as stated in the article text.*** noiseThr = 204 gnrThr = 518.6500 F:\RawData\Cytoviva data\Orly\1-22-2015 (OD 470 Isotype 1)\Andor\Kidney\Slide 15-21-5 (Kidney) OD 470 Isotype 0001 NORM Type 1 TotalSize 24104 AboveNoise 23850 AboveGNRThr 19951 GNRs 4321 Type 2 TotalSize 2126 AboveNoise 1753 AboveGNRThr 366 GNRs 3 Type 3 TotalSize 4771 AboveNoise 4747 AboveGNRThr 1538 GNRs 32 Type 4 TotalSize 0 AboveNoise 0 AboveGNRThr 0 GNRs 0 File #1: Total above noise threshold = 220788, above noise threshold = 106678, detected as GNRs = 5727, positives ratio = 2.593891 noiseThr = 256.5000 gnrThr = 639.4000 F:\RawData\Cytoviva data\Orly\1-22-2015 (OD 470 Isotype 1)\Andor\Kidney\Slide 15-21-5 (Kidney) OD 470 Isotype 0002 NORM Type 1 TotalSize 23565 AboveNoise 20338 AboveGNRThr 5575 GNRs 277 Type 2 TotalSize 5134 AboveNoise 4604 AboveGNRThr 1898 GNRs 168 Type 3 TotalSize 3982 AboveNoise 3889 AboveGNRThr 1539 GNRs 3 Type 4 TotalSize 0 AboveNoise 0 AboveGNRThr 0 GNRs 0 File #2: Total above noise threshold = 206442, above noise threshold = 79988, detected as GNRs = 1589, positives ratio = 0.769708 noiseThr = 75 gnrThr = 173.6500 F:\RawData\Cytoviva data\Orly\1-22-2015 (OD 470 Isotype 1)\Andor\Kidney\Slide 15-21-5 (Kidney) OD 470 Isotype 0003 NORM Type 1 TotalSize 6329 AboveNoise 6329 AboveGNRThr 6107 GNRs 845 Type 2 TotalSize 3607 AboveNoise 3480 AboveGNRThr 2770 GNRs 93 Type 3 TotalSize 2018 AboveNoise 2018 AboveGNRThr 2018 GNRs 2 Type 4 TotalSize 0 AboveNoise 0 AboveGNRThr 0 GNRs 0 File #3: Total above noise threshold = 248058, above noise threshold = 181379, detected as GNRs = 7459, positives ratio = 3.006958 noiseThr = 84 gnrThr = 202.4000 F:\RawData\Cytoviva data\Orly\1-22-2015 (OD 470 Isotype 1)\Andor\Kidney\Slide 15-21-5 (Kidney) OD 470 Isotype 0004 NORM Type 1 TotalSize 9945 AboveNoise 9704 AboveGNRThr 8745 GNRs 4901 Type 2 TotalSize 923 AboveNoise 923 AboveGNRThr 669 GNRs 0 Type 3 TotalSize 2574 AboveNoise 2574 AboveGNRThr 1473 GNRs 0 Type 4 TotalSize 0 AboveNoise 0 AboveGNRThr 0 GNRs 0 File #4: Total above noise threshold = 240098, above noise threshold = 151330, detected as GNRs = 17791, positives ratio = 7.409891 >>